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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_610401_611432_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
610401 - 611432
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCACTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTTGGTTTCACT
Flanking Amino Acid:
LPSQCLNLEQACVMAGGCWA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
71.7
0.49
0.9
63.1
38.5
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
51.3
0.12
2.3
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015778
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016441
579081 - 611507
32427