Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6115040_6115160_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6115040 - 6115160

Intron Length:

121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCTTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCAC

U12 Branch Point Sequence:

GCACACTCACCT

Flanking Amino Acid:

DFTDLEGTLAKRLLQQLEEV

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

35.2

Major BPS

64.9

0.37

29.8

Major PPT

70.9

0.47

0.9

63.9

36.7

Minor 5ss

32.6

-2

3.3

40.4

Minor BPS

43.5

-0.4

1.9

56.75

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003839

6110786 - 6117708

6923