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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6115638_6115753_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6115638 - 6115753
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCAA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TCTTTTCTCACA
Flanking Amino Acid:
KDKRLGTKGVDFSDSTSKTS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
61.1
41.3
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
87.9
0.85
0.6
83.5
24.9
Minor 5ss
31.3
-2.1
3
30.1
43
Minor BPS
49
-0
2
66.77
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003749
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003839
6110786 - 6117708
6923