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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6121006_6122478_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6121006 - 6122478
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGATGGGG
5'SS Class:
weak_major
3'SS Sequence:
ATAAAACCATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
TAGAATAAAACC
Flanking Amino Acid:
LLIPWGKYHPQLFIILVNIQ
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.1
41.7
39.3
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
50.9
0.02
1
46.9
40.6
Minor 5ss
25.4
-2.8
3.4
34
42.8
Minor BPS
41.3
-0.6
1.9
50.16
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003584
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003656
6120918 - 6127497
6580