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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6122780_6122862_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6122780 - 6122862
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TACTCCTTCACT
Flanking Amino Acid:
EYGRAALERREPPVATVFAH
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
75.1
0.57
0.8
66
35.9
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
72.3
0.78
1.7
85.03
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003584
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003656
6120918 - 6127497
6580