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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6142686_6144634_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6142686 - 6144634
Intron Length:
1949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCATTCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GCACCTTTAAAC
Flanking Amino Acid:
QKWRQKHITYSVHNYTPKVG
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
70.3
0.46
0.9
64.7
35.5
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
56.6
0.19
1.4
58.9
39.5

Associated Gene:

Gene:
MMP24
Ensembl Gene ID:
ENSAPLG00000007771
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008068
6136205 - 6178026
41822