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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6144940_6158668_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6144940 - 6158668
Intron Length:
13729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GCATACTAAACC
Flanking Amino Acid:
PWTLGNSNHDGNDLFLVAVH
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
69.6
41.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
80.9
0.7
0.7
75.7
26.5
Minor 5ss
33
-1.9
3.7
43.3
45.4
Minor BPS
51.7
0.03
1.9
61.03
43.7

Associated Gene:

Gene:
MMP24
Ensembl Gene ID:
ENSAPLG00000007771
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008068
6136205 - 6178026
41822