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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6175474_6177688_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6175474 - 6177688
Intron Length:
2215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTATC
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAT
U12 Branch Point Sequence:
GTGATGAGAAAT
Flanking Amino Acid:
PQGAFISKEGFYTYFYKGKE
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
71.2
38.6
Major BPS
63.5
0.34
1.4
57.1
49.4
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
49.3
-0
2.5
72.8
36.5
Minor BPS
36.6
-0.9
2.2
52.48
41.6

Associated Gene:

Gene:
MMP24
Ensembl Gene ID:
ENSAPLG00000007771
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008068
6136205 - 6178026
41822