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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_622611_623101_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
622611 - 623101
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TCCTCATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTCCTCATTT
Flanking Amino Acid:
RAVTFLRRMRGCVKQEMESD
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.2
0.63
0.8
73.2
30.4
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
62.2
0.46
1.8
81.22
40.6

Associated Gene:

Gene:
STAU1
Ensembl Gene ID:
ENSAPLG00000010527
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011063
622523 - 647387
24865