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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6264183_6265106_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6264183 - 6265106
Intron Length:
924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTTCTTCATT
Flanking Amino Acid:
MVKLSCRTGVTQWI
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
76
32.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
34.8
-1.7
2.8
45.5
37.1
Minor BPS
61.8
0.45
1.7
77.24
40.1

Associated Gene:

Gene:
UQCC1
Ensembl Gene ID:
ENSAPLG00000007532
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042776
6220407 - 6265973
45567