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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_628020_628781_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
628020 - 628781
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
PKPALKTEEKTPVKKPGDGR
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.8
0.6
1
75.2
38.5
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
STAU1
Ensembl Gene ID:
ENSAPLG00000010527
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034828
622523 - 642175
19653
ENSAPLT00000011063
622523 - 647387
24865