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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6295833_6296460_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6295833 - 6296460
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGACTAAACT
Flanking Amino Acid:
QLEAGGVSGQGSLPDKWEPT
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.6
32.3
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
77.8
0.63
0.9
82.9
26.2
Minor 5ss
35
-1.7
2.9
44.9
43.1
Minor BPS
62.2
0.46
2
84.76
41.8

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607