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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6296544_6297815_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6296544 - 6297815
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
AGTTGTTCAATG
Flanking Amino Acid:
ALLQLEEEQRRCENLAEVNT
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
73.5
0.53
1
78.3
27.6
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
47.5
-0.3
2
54.47
41.2

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890