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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_629721_630245_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
629721 - 630245
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTTCCTAAACG
Flanking Amino Acid:
IKKKTKSIVKLQTSPEYGQG
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.1
0.61
0.9
73.9
36.5
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
73.3
0.59
1.7
77.84
39.2

Associated Gene:

Gene:
STAU1
Ensembl Gene ID:
ENSAPLG00000010527
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011063
622523 - 647387
24865
ENSAPLT00000034828
622523 - 642175
19653