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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6300922_6301397_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6300922 - 6301397
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
ATTCTATTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCTCTTGGACA
Flanking Amino Acid:
KTLNNTVEILEASRLEVEYE
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
76
33.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
76.6
0.6
0.9
75.3
37.9
Minor 5ss
64.3
0.48
2.2
76.9
32.6
Minor BPS
65.8
0.49
1.5
74.83
36.8

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890