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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6303147_6303589_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6303147 - 6303589
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTCTTTTAACT
Flanking Amino Acid:
HLQSLVESLKSDCENLEKTR
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.8
83.1
28.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83
0.74
0.8
77.2
31.6
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
76.9
0.92
1.1
87.39
31.2

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307