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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6303773_6304714_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6303773 - 6304714
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TCCCCTTCTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTGTCACTAAAA
Flanking Amino Acid:
MERVCHDQDLLLKDLAALEA
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
74.7
35.4
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
69
0.43
1
67
33.1
Minor 5ss
36.1
-1.6
3.5
59
45.5
Minor BPS
52.3
0.07
2
71.05
40.4

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890