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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_630459_631793_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
630459 - 631793
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCCCTCTGAAAC
Flanking Amino Acid:
LKRNLPVNFEVTKESGPPHM
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
78.3
0.7
1
80
32.1
Major PPT
61.9
0.27
1
57.3
36.5
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
49.6
-0
1.6
57.5
41

Associated Gene:

Gene:
STAU1
Ensembl Gene ID:
ENSAPLG00000010527
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034828
622523 - 642175
19653