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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_630477_631793_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
630477 - 631793
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CGCTTTCACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTACTAAGT
Flanking Amino Acid:
LKRNLPVNFEFFPLKQVTKE
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.3
0.48
0.9
69.3
36
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
52
0.14
2.2
81.5
39.9

Associated Gene:

Gene:
STAU1
Ensembl Gene ID:
ENSAPLG00000010527
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011063
622523 - 647387
24865