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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6305705_6307222_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6305705 - 6307222
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATCCTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATCC
Flanking Amino Acid:
KEETQEKLNQVYLQQESASS
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.3
0.61
0.9
73.3
36.6
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
56.8
0.19
1.6
67.21
38.5

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890
ENSAPLT00000027821
6294347 - 6326653
32307