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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6307417_6309519_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6307417 - 6309519
Intron Length:
2103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
TTACAACATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATGTTTACAACA
Flanking Amino Acid:
QGLSEQLAEARSVKETLESS
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
67
0.38
1
59.9
40.4
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
48.7
-0.1
1.8
62.39
37.9

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890