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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6312173_6312480_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6312173 - 6312480
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTCCCAGTAACT
Flanking Amino Acid:
EVKEQQVYGQNITEKLKAEL
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
86.7
0.82
0.8
80.7
35.9
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
48.6
-0
2.3
71.56
44.7

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307