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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6315033_6315858_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6315033 - 6315858
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTAT
5'SS Class:
weak_major
3'SS Sequence:
ATCTGTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
ATCTGTTTCATA
Flanking Amino Acid:
RREIQELNNQVQSLQEVVLE
Intron Amino Acid Position:
1143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.2
66
42.4
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
73.8
0.53
0.8
68.5
36.8
Minor 5ss
50.1
0
2.9
73.3
43.6
Minor BPS
47.2
-0.2
2.1
60.51
40.7

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890