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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6317114_6318638_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6317114 - 6318638
Intron Length:
1525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
TTTACTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTCTTTGACC
Flanking Amino Acid:
LQKQLSQCQEERQMAEDKKN
Intron Amino Acid Position:
1334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.5
0.66
0.9
73.6
36.8
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
78.4
0.88
1.1
81.39
33.4

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607
ENSAPLT00000031647
6295764 - 6326653
30890