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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6323700_6324387_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6323700 - 6324387
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
NAELRRTLEQEEAHALSSQL
Intron Amino Acid Position:
2593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021370
6294347 - 6326653
32307