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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6324215_6324387_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6324215 - 6324387
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAACA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
DEDKTPASRQEEAHALSSQL
Intron Amino Acid Position:
2631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
72.2
32.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
34.4
-1.8
2.8
40.9
45.1
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031647
6295764 - 6326653
30890
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607