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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6324436_6325989_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6324436 - 6325989
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
CTTCTCTGAGAT
Flanking Amino Acid:
SSQLAELQNQVTLLQQQLAQ
Intron Amino Acid Position:
2647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
83.5
0.75
0.8
81
31
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
47.7
-0
1.8
67.47
42.9

Associated Gene:

Gene:
CEP250
Ensembl Gene ID:
ENSAPLG00000007185
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031647
6295764 - 6326653
30890
ENSAPLT00000027821
6294347 - 6326653
32307
ENSAPLT00000021370
6294347 - 6326653
32307
ENSAPLT00000007494
6294347 - 6326953
32607