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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6335775_6347451_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6335775 - 6347451
Intron Length:
11677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTCTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TATTGTTAAACT
Flanking Amino Acid:
GKSFQQSHVHVHDLQSFGLD
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
69.3
37.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
90
0.9
0.7
84.9
28.3
Minor 5ss
38.2
-1.3
3.5
55.6
48.7
Minor BPS
58.5
0.34
2.1
80.6
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006627
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006927
6332978 - 6354982
22005