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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6347484_6348123_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6347484 - 6348123
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
AGTTGTTTGAGT
Flanking Amino Acid:
HDLQSFGLDNINMTHYIKHL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85
0.79
0.8
82.4
33.2
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
49
0
2.1
69.54
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006627
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006927
6332978 - 6354982
22005