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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6348221_6349769_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6348221 - 6349769
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCGCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTGTATTAATT
Flanking Amino Acid:
LDGTDVTAQQASMMFQYFVK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.8
0.65
0.8
73.4
31.5
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
60
0.39
1.7
76.06
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006627
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006927
6332978 - 6354982
22005