About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6359083_6359479_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6359083 - 6359479
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTCCC
5'SS Class:
major
3'SS Sequence:
CTGGCTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GTCACACTGATG
Flanking Amino Acid:
TSAFSTGELSRTYVRVKQFI
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
57.3
42
Major BPS
71.2
0.53
1
61
37.5
Major PPT
78.5
0.64
0.9
72.5
37.6
Minor 5ss
29.5
-2.4
3
37.1
40.1
Minor BPS
42.3
-0.7
1.9
46.11
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006576
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039410
6357979 - 6361563
3585
ENSAPLT00000022053
6357397 - 6361389
3993
ENSAPLT00000018148
6357397 - 6361144
3748
ENSAPLT00000006827
6357979 - 6361563
3585
ENSAPLT00000042824
6357979 - 6361218
3240