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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6359980_6360184_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6359980 - 6360184
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCTAT
U12 Branch Point Sequence:
CTGATGCTATCT
Flanking Amino Acid:
LSLDVVQWWLTLQGPSDSSQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
49.9
-0
1.4
50.2
44.9
Major PPT
71.7
0.49
0.9
62.4
39.8
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
38.6
-0.7
2.3
56.34
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006576
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022053
6357397 - 6361389
3993
ENSAPLT00000018148
6357397 - 6361144
3748
ENSAPLT00000006827
6357979 - 6361563
3585
ENSAPLT00000042824
6357979 - 6361218
3240
ENSAPLT00000039410
6357979 - 6361563
3585