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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6360314_6361050_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6360314 - 6361050
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCACT
5'SS Class:
major
3'SS Sequence:
TCGCCCACCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
CGTCGCCCACCC
Flanking Amino Acid:
GPHRHTRTHQPTARCSPSTN
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
75.3
40.8
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
64.7
0.33
0.9
54.9
35
Minor 5ss
47.6
-0.2
2.6
67.7
43
Minor BPS
36.2
-1
2.2
45.65
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006576
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042824
6357979 - 6361218
3240