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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6361390_6361479_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
6361390 - 6361479
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCCTGCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTGGCCTGGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
59
0.2
1.2
57.5
43
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
52
0.14
1.7
67.05
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006576
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039410
6357979 - 6361563
3585