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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6365008_6366229_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6365008 - 6366229
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
TTGGGCTCACAC
Flanking Amino Acid:
VSEKEDSNWWKGWIEGQPHR
Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
40.1
-0.7
2.2
51.29
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006145
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006423
6364933 - 6384828
19896