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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6370883_6371717_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6370883 - 6371717
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACCCAT
U12 Branch Point Sequence:
TCTTGGTTACAG
Flanking Amino Acid:
LSEPVQAPLQEPGETILHLA
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
48.7
-0
1.4
58.4
40.3
Major PPT
75.1
0.56
1
67.8
42.5
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
40.7
-0.8
2.6
51.73
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006145
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006423
6364933 - 6384828
19896