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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6371896_6373172_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6371896 - 6373172
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TGGTCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GGGCTCCTAACT
Flanking Amino Acid:
YSAKPAVHSDMAFRKNFIIS
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
35.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
68.9
0.43
1.1
62
44.4
Minor 5ss
37.5
-1.4
2.9
48.1
41.3
Minor BPS
52.5
0.16
1.7
67.76
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006145
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006423
6364933 - 6384828
19896