Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6373265_6373794_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6373265 - 6373794

Intron Length:

530

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGATGC

5'SS Class:

major

3'SS Sequence:

GGCTGTTTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

TCACCTCTAGCT

Flanking Amino Acid:

LDKLATSELLLARNISNVGF

Intron Amino Acid Position:

486

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

59.5

40.6

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

75.5

0.57

68.5

42.1

Minor 5ss

-1.5

3.3

47.1

43.8

Minor BPS

48.1

-0

1.9

67.09

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006145

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006423

6364933 - 6384828

19896