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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6375614_6376779_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6375614 - 6376779
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTCCTCTCATCC
Flanking Amino Acid:
KTGTLFKKSDGLRKVWQKRK
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
42.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.7
0.65
0.9
69.5
40.7
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
47
-0.2
1.8
56.49
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006145
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006423
6364933 - 6384828
19896