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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6378545_6378992_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6378545 - 6378992
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTGCTCTTATGT
Flanking Amino Acid:
NHIKHCSSQFNFFQECLNAT
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
75.8
0.58
0.7
72.5
25.6
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
48.4
-0
1.9
65.5
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006145
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006423
6364933 - 6384828
19896