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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6379079_6379549_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6379079 - 6379549
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TAAACCTTCAGT
Flanking Amino Acid:
RRTFQLNMCEYLIKVNEIKT
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
85.5
0.8
0.7
82.6
28.5
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
50.2
0.09
2.1
70.93
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006145
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006423
6364933 - 6384828
19896