Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6382824_6384702_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6382824 - 6384702

Intron Length:

1879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAGG

5'SS Class:

strong_major

3'SS Sequence:

TCTGCATTTCTAG|R

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGGAT

U12 Branch Point Sequence:

ATGACCATAACT

Flanking Amino Acid:

CKATANSLEEXLDADRAVLQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.8

43.8

Major BPS

63.6

0.34

1.4

63.4

44.3

Major PPT

74.8

0.56

0.9

66.2

39.8

Minor 5ss

33.3

-1.9

2.8

39.7

45.9

Minor BPS

65.2

0.56

1.7

80.61

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006145

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006423

6364933 - 6384828

19896