Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6387085_6387618_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6387085 - 6387618

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTGAGTATC

5'SS Class:

strong_major

3'SS Sequence:

ATTTATGTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

ATCTCTTTATCC

Flanking Amino Acid:

RKEPEPLEKPNRPKTSFNWF

Intron Amino Acid Position:

1948

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

84.1

26.4

Major BPS

83.9

0.84

73.9

41.3

Major PPT

79.1

0.66

Minor 5ss

36.6

-1.5

2.9

46.1

36.1

Minor BPS

65.8

0.48

1.6

72.26

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005587

6386904 - 6421718

34815