About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6387720_6388410_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6387720 - 6388410
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
GTTCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
TGTGGCTCAGGC
Flanking Amino Acid:
DSIGNKYLLTGKVEAEFQLL
Intron Amino Acid Position:
1915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
60.8
45.3
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
79.2
0.66
0.8
69.9
36.6
Minor 5ss
30.6
-2.2
3.3
39.3
46
Minor BPS
39.2
-0.8
2.3
51.01
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815