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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6393606_6394013_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6393606 - 6394013
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCTGGGAAC
5'SS Class:
major
3'SS Sequence:
TTCCTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ACTTTTTCAGTC
Flanking Amino Acid:
MATPVLGGELDGFILQGCSL
Intron Amino Acid Position:
1673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.4
59.4
42.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.3
0.66
0.7
73
31.9
Minor 5ss
16.8
-3.8
3.6
17.5
29
Minor BPS
47.3
-0.2
1.7
55.92
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815