Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6395212_6395692_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6395212 - 6395692

Intron Length:

481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTATGCAGG

5'SS Class:

weak_major

3'SS Sequence:

TTCTTCTGTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TCCTTGCTAACT

Flanking Amino Acid:

IPKQLNPVFGEVVELTVSFP

Intron Amino Acid Position:

1550

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.1

0.24

1.1

46.5

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

83.2

0.75

0.9

76.7

37.5

Minor 5ss

46.1

-0.4

2.5

53.4

44.8

Minor BPS

48.4

-0

2.3

71.51

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005587

6386904 - 6421718

34815