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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6400299_6400940_R

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6400299 - 6400940
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
ATGCATTGATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAGAC
U12 Branch Point Sequence:
TGTTTCAGACAT
Flanking Amino Acid:
YESLKELYNQEDAENDDLND
Intron Amino Acid Position:
1387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
64.2
0.35
1
60.7
37.6
Major PPT
45.6
-0.2
1.7
51.6
46.2
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
44.9
-0.3
2
67.81
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815