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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6412946_6413577_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6412946 - 6413577
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CACACTTTATCC
Flanking Amino Acid:
YVQVSFCGQQGETSVESNTT
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
80.9
0.7
0.8
73.3
36.8
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
49.8
-0
1.7
55.68
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815