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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6413762_6413966_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6413762 - 6413966
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATGAA
U12 Branch Point Sequence:
GGAACATGAATT
Flanking Amino Acid:
SSSSHVEDIERNLLLPKRVP
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
54.1
0.1
1.1
45.7
37.1
Major PPT
80.7
0.69
0.9
77.4
41.2
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
47.7
-0
1.7
62.2
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815