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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_641687_641898_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
641687 - 641898
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TGTAATCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTCTGTAATC
Flanking Amino Acid:
ASVTSTNAAAAPSNMANPKE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.1
0.63
0.9
73.9
41.2
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
67.7
0.53
2
81.67
33.1

Associated Gene:

Gene:
STAU1
Ensembl Gene ID:
ENSAPLG00000010527
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034828
622523 - 642175
19653
ENSAPLT00000011063
622523 - 647387
24865